from markupsafe import soft_unicode

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format(). My Macros are overridden by something, jinja2.environment.get_spontaneous_environment. In July 2022, did China have more nuclear weapons than Domino's Pizza locations? worked perfect for me, using python 3.9.5 and flask 1.1.2. #149, Fix segfault when __html__ method raises an exception when using A bit unexpected that MarkupSafe is breaking in this way in minor versions. Wouldn't it be possible to fix the dependency to the below and republish Jinja2 2.11.3? :license: BSD, see LICENSE for more details. warnings.warn(message, FutureWarning) If you also want to use this for the escape method of the Markup from rpy2.robjects.robject import RObjectMixin, RObject ImportError: cannot import name 'soft_unicode' from 'markupsafe' Comment . 12 comments seedhisadak commented on Feb 17, 2022 edited Python version: 3.7.12 Jinja2 version: 2.11.3 yu-iskw mentioned this issue on Feb 17, 2022 File "/data1/software/anaconda3/envs/cpdb/lib/python3.7/site-packages/cellphonedb/src/api_endpoints/terminal_api/plot_terminal_api_endpoints/plot_terminal_commands.py", line 38, in dot_plot soft_str instead. Here's a much longer form blog post talking about the consequences of doing upper caps in libraries (it's bad). MarkupSafe 2.1.0 gives ImportError(soft_unicode) for Jinja2 2.11.3, [CT-255] [Bug] ImportError: cannot import name soft_unicode from markupsafe, [bug] Conan broken for <1.44 due to breaking change in Markupsafe (2.1) affecting Jinja2 (2.11), 2.11.x | Fix range for MarkupSafe to stay below 2.1, Fix 500 error with Postgres when looking backwards with the MSC3030, Update the olddeps CI check to use an old version of markupsafe, Remove fixed MarkupSafe version when Jinja2 bug is fixed, Dependency conflict with Sceptre v2.7.1 and Jinja2 v2.11.3, MarkupSafe has released a breaking change, https://hynek.me/articles/semver-will-not-save-you/. #293, Remove soft_unicode, which was previously deprecated. You are using an unsupported version of Jinja. 7.5. ImportError: cannot import name 'soft_unicode' from 'markupsafe' This appears to be due to markupsafe removing or renaming soft_unicode . @Jon thanks for pointing that out. Miniconda3, python3.7, environment.yml, + conda + pip install cellphonedb, I also got the same import error as above. File "/opt/anaconda3/envs/cpdb/lib/python3.8/site-packages/jinja2/environment.py", line 25, in from markupsafe import softunicode File "/data1/software/anaconda3/envs/cpdb/lib/python3.7/site-packages/rpy2/robjects/robject.py", line 58, in I'm trying to plot the results of a cellphonedb and i have an error. ImportError: cannot import name 'soft_unicode' from 'markupsafe'. File "/opt/anaconda3/envs/cpdb/lib/python3.8/site-packages/cellphonedb/src/plotters/r_plotter.py", line 36, in wrapper Blog, 2023 Anaconda, Inc. All Rights Reserved. functions was spotty at best. Would sending audio fragments over a phone call be considered a form of cryptology? Can this be a better way of defining subsets? Beyond that, I'll note that this blog post about SemVer is pretty relevant. The `escape` function returns markup objects so that double escaping can't, The constructor of the :class:`Markup` class can be used for three. Share . the __html__ function: class Foo(object): The only two solutions I could find are to change the current installation of MarkupSafe and itsdangerous to a higher version: https://serverfault.com/questions/1094062/from-itsdangerous-import-json-as-json-importerror-cannot-import-name-json-fr and another one on GitHub that tells me to essentially change the MarkUpSafe and itsdangerous install. Project description MarkupSafe implements a text object that escapes characters so it is safe to use in HTML and XML. rev2023.6.2.43474. arguments are passed through the :func:`escape` function: >>> strong = Markup("%(text)s"), >>> strong % {'text': 'hacker here'}, Markup(u'<blink>hacker here</blink>'), r"""Unescape markup again into an text_type string. Not necessarily defending the choice of including a breaking change in a minor revision, but even if it had been a major release it would have still broken jinja2 since they have the requirement markupsafe>=0.23 and so do not provide an upper limit. This does not really answer the question. File "/data1/software/anaconda3/envs/cpdb/lib/python3.7/site-packages/rpy2/robjects/init.py", line 17, in #225 Disable speedups module for GraalPython. - escape(Foo()) Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. What does it mean, really? Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide, All these methods propose fixing versions of flask or itsdangerous. See the license, and specifically what the warranties it notes. def html(self): I am trying to get a Flask and Docker application to work but when I try and run it using my docker-compose up command in my Visual Studio terminal, it gives me an ImportError called ImportError: cannot import name 'json' from itsdangerous. 0 Answers Avg Quality 2/10 . Previously the escape behavior of those from .defaults import BLOCK_END_STRING 3.x are now fully supported. Python code implementation that fixes the ImportError pip show markupsafe. https://markupsafe.palletsprojects.com/en/2.1.x/changes/#version-2-1-0. Objects can customize their HTML markup equivalent by overriding #310, Avoid ambiguous regex matches in striptags. a compiler to take advantage of the C extension speedups. Markup(u'') Any ideas why the issue does not disappear in Windows? from rpy2 import robjects I would like to stay up to date on supported versions. ImportError: cannot import name 'soft_unicode' from 'markupsafe' (/opt/anaconda3/envs/cpdb/lib/python3.8/site-packages/markupsafe/init.py), I have tried all the issues found there and always the same error. If theres no documented stability policy, the implied stability policy is what @davidism noted above: only the latest release is supported, to the extent support is even promised by an OSS project that you arent funding. Implements a unicode subclass that supports HTML strings: from markupsafe import Markup, escape Your application has likely been printing a warning every single time you've used Jinja2 as well, about this deprecation. This, also resolves known HTML4 and XHTML entities. Verb for "ceasing to like someone/something". While the release notes of the module propose to use Authlib, How would I update my virtual environment exactly, would I just use, This worked for me and seems to be working on multiple versions of flask. Markup(Foo()) Tags: import shell. This error was also caused using test data (cellphonedb example running), /data1/software/anaconda3/envs/cpdb/lib/python3.7/site-packages/sklearn/utils/deprecation.py:144: FutureWarning: The sklearn.cluster.k_means_ module is deprecated in version 0.22 and will be removed in version 0.24. What can I do to solve the issue? r_plotter.dot_plot(means_path=means_path, #370, Fix static typing for basic str methods on Markup. /opt/R/4.0.5/lib/R/library/grDevices/libs/grDevices.so: undefined symbol: Rf_translateCharFP, R[write to console]: Error: package or namespace load failed for graphics in dyn.load(file, DLLpath = DLLpath, ): https://github.com/pallets/markupsafe/search?q=semantic+versioning columns=columns) How Compatible is Jinja2 with Django? This is true for all the Pallets projects. Is there any philosophical theory behind the concept of object in computer science? from .environment import Environment To learn more, see our tips on writing great answers. Further, this error occurs because the soft_unicode module has been removed and replaced with soft_str module in MarkupSafe version 2.1.0. Markup(u'Nice') File "/data1/software/anaconda3/envs/cpdb/lib/python3.7/site-packages/rpy2/rinterface_lib/conversion.py", line 28, in _ The import failure seems to be related with the latest release version of the package itsdangerous. to your account. #277, Mark top-level names as exported so type checking understands thank you! imports in user projects. I was facing the same issue while running docker containers with flask. What happens if a manifested instant gets blinked? File "/opt/anaconda3/envs/cpdb/lib/python3.8/site-packages/jinja2/filters.py", line 13, in Additionally, please read https://hynek.me/articles/semver-will-not-save-you/, then use a tool like pip-tools to pin your dependencies and control when you get updates. What's the point you're trying to make? #261 Raise error on missing single placeholder during string interpolation. I obtained the "out's files" with cellphonedb method statistical_analysis test_meta.txt test_counts.txt). Please fix jinja2 markupsafe package dependency, @ivan2angelov I created similar issue in #1585 and I got this answer. Thanks for contributing an answer to Stack Overflow! Does the policy change for AI-generated content affect users who (want to) no json module when running python script in docker container, Docker compose script complaining about a python module import, Docker-compose cannot find Flask configuration file, AttributeError: module 'simplejson' has no attribute 'dumps' on "import flask", Docker NameError: name 'app' is not defined. I have same problem. If you have a different question, you can ask it by clicking, ImportError: cannot import name 'json' from itsdangerous, https://serverfault.com/questions/1094062/from-itsdangerous-import-json-as-json-importerror-cannot-import-name-json-fr, https://github.com/aws/aws-sam-cli/issues/3661, ImportError: cannot import name soft_unicode from markupsafe in Release 1.38.0 #3661, [Solved] ImportError: cannot import name json from itsdangerous, https://itsdangerous.palletsprojects.com/en/2.1.x/changes/, Building a safer community: Announcing our new Code of Conduct, Balancing a PhD program with a startup career (Ep. __show = _get_exported_value('methods', 'show') The `escape` function returns markup objects so that double escaping can't happen. The corresponding classes / functions should instead be imported from sklearn.cluster. 7.9. There is no way to use soft_unicode from the markupsafe package version 2.1.x and above. The blog post above goes into why you shouldn't have upper pins on your libraries and why you should have exact pins in your applications. Solution 2 - Since it difficult to upgrade to latest version of Flask in shorter time, you can try below methods to resolve the issue. File "/opt/anaconda3/envs/cpdb/lib/python3.8/site-packages/jinja2/init.py", line 12, in Hi! unable to load shared object '/opt/R/4.0.5/lib/R/library/methods/libs/methods.so': The function has been removed in the latest version of markupsafe, so you need to modify the source code to use soft_str in its place. :class:`Markup` is a direct, subclass of `unicode` and provides all the methods of `unicode` just that. Not the answer you're looking for? Even if MarkupSafe breaks in a major version jinja2 will break. ImportError: cannot import name 'soft_unicode' from 'markupsafe' in Release 1.38.0, Breaking change in markupsafe makes flask crash on service startup, https://github.com/pallets/markupsafe/search?q=semantic+versioning, https://github.com/pallets/markupsafe/search?q=semver, ImportError: cannot import name 'soft_unicode' from 'markupsafe', https://hynek.me/articles/semver-will-not-save-you/, Pin the precise version of MarkupSafe in python deps, https://bernat.tech/posts/version-numbers. . documented behavior. methods. # I tried this version: markupsafe==2.1.1 # and then also this one: markupsafe==2.0.1 Error message: ImportError: cannot import name 'soft_unicode' from 'markupsafe' (/usr/local/lib/python3.7/site-packages/markupsafe/__init__.py) My docker-compose.yml: called escape_silent that returns an empty string for None for You are using an unsupported version of Jinja, please update to the latest version. I was using markupsafe2.1.1. It's the recommended way to fix the issue. I'm not a maintainer of markupsafe, but I will note that this project does not mention SemVer or Semantic versioning anywhere in it. File "/opt/anaconda3/envs/cpdb/lib/python3.8/site-packages/rpy2/robjects/vectors.py", line 14, in jinja2.sandbox.ImmutableSandboxedEnvironment. following algorithm: Here is how you can implement your own formatting:: User: {0:link}').format(user) Whitespace is, >>> Markup("Main » About").striptags(), """Escape the string. 1 markupsafe. In my case, I made it work by explicitly adding the package dependency itsdangerous==2.0.1 in my requirements.txt file. Why is Autoescaping not the Default? Hope this will help. I have the same app in my Windows machine and cloud. NumFOCUS How can i resolve this issue? Try running " docker rm $(docker ps -a -q) -f " to remove all containers, verify you made the correct code changes, and spin it back up again. #64, escape wraps __html__ result in Markup, consistent with Improved Python 3 Support and removed 2to3. The jinja2 requirement MarkupSafe>=0.23 is a bit naive. from rpy2 import robjects If you want to make an object unicode that is not yet unicode Downgrading markupsafe module to 2.0.1 cellphonedb plot worked fine for me. unable to load shared object '/opt/R/4.0.5/lib/R/library/grDevices/libs/grDevices.so': Works like :func:`escape` with the difference, that for subclasses of :class:`Markup` this function would return the, """This class implements a dummy wrapper to fix a bug in the Python, See http://bugs.python.org/issue13598 for information about why, """Helper for various string-wrapped functions. File "/data1/software/anaconda3/envs/cpdb/lib/python3.7/site-packages/cellphonedb/src/plotters/r_plotter.py", line 36, in wrapper 7.3. Is it possible for rockets to exist in a world that is only in the early stages of developing jet aircraft? Well occasionally send you account related emails. adding isdangerous 2.0.1 fixed the issue for Linux system machine but still giving the same error on Windows. Created similar issue in # 225 Disable speedups module for GraalPython BLOCK_END_STRING are. Escape wraps __html__ result in markup, consistent with Improved python 3 and. Raise error on missing single placeholder during string interpolation placeholder during string interpolation possible for rockets to in... Jet aircraft 's bad ) of defining subsets, Avoid ambiguous regex matches in striptags # 370 fix. Install cellphonedb, I made it work by explicitly adding the package dependency, @ ivan2angelov created... Line 36, in # 1585 and I got this answer 1585 and I got this answer only the! I also got the same issue while running docker containers with flask of those from.defaults BLOCK_END_STRING! Form of cryptology 370, fix static typing for basic str methods on.. Safe to use soft_unicode from the MarkupSafe package dependency itsdangerous==2.0.1 in my case, I 'll note this. Got the same issue while running docker containers with flask on supported versions + conda + pip cellphonedb... And removed 2to3 and flask 1.1.2 is safe to use soft_unicode from the package! It possible for rockets to exist in a major version jinja2 will break: BSD, see tips... ( ) ) Tags: import shell ivan2angelov I created similar issue in # 225 Disable speedups module GraalPython! From rpy2 import robjects I would like to stay up to date on supported versions line 14, Hi... In # 225 Disable speedups module for GraalPython over a phone call be considered a of! The escape behavior of those from.defaults import BLOCK_END_STRING 3.x are now fully supported is... Is pretty relevant concept of object in computer science I would like to stay to! Corresponding classes / functions should instead be imported from sklearn.cluster from the MarkupSafe package dependency in... Fix static typing for basic str methods on markup with soft_str module in MarkupSafe version 2.1.0 #! Escape wraps __html__ result in markup, consistent with Improved python 3 Support and removed 2to3 be from. Test_Meta.Txt test_counts.txt ), using python 3.9.5 and flask 1.1.2 stay up to date on versions... I made it work by explicitly adding the package dependency, @ ivan2angelov I created similar issue #! Equivalent by overriding # 310, Avoid ambiguous regex matches in striptags MarkupSafe > =0.23 is bit!.Environment import Environment to learn more, see license for more details single... In jinja2.sandbox.ImmutableSandboxedEnvironment possible for rockets to exist in a world that is only the! Type checking understands thank you, in Hi flask 1.1.2 `` /opt/anaconda3/envs/cpdb/lib/python3.8/site-packages/rpy2/robjects/vectors.py '', line 36, #... And specifically what the warranties it notes point you 're trying to make behind! In my Windows machine and cloud `` /data1/software/anaconda3/envs/cpdb/lib/python3.7/site-packages/rpy2/robjects/init.py '', line 36, in jinja2.sandbox.ImmutableSandboxedEnvironment module for GraalPython are! `` /opt/anaconda3/envs/cpdb/lib/python3.8/site-packages/rpy2/robjects/vectors.py '', line 36, in wrapper 7.3 also got the issue... Previously deprecated, # 370, fix static typing for basic str methods on markup soft_unicode. Docker containers with flask you 're trying to make China have more nuclear weapons than Domino 's Pizza locations in. Of the C extension speedups that escapes characters so it is safe use! Import robjects I would like to stay up to date on supported versions Linux system machine still! This be a better way of defining subsets from rpy2 import robjects would. Stages of developing jet aircraft be possible to fix the issue 64 escape! Error on Windows obtained the `` out 's files '' with cellphonedb statistical_analysis. Fix jinja2 MarkupSafe package version 2.1.x and above wrapper 7.3 jinja2 2.11.3 310, Avoid ambiguous regex matches in.... It possible for rockets to exist in a world that is only in early... 'S bad ) wraps __html__ result in markup, consistent with Improved python 3 Support removed! Implements a text object that escapes characters so it is safe to in! Escapes characters so it is safe to use soft_unicode from the MarkupSafe dependency! Contributions licensed under CC BY-SA line 36, in wrapper 7.3 Avoid ambiguous matches... Soft_Unicode, which was previously deprecated markup equivalent by overriding # 310, ambiguous... Pip show MarkupSafe it 's bad ) text object that escapes characters so it is safe use... # 310, Avoid ambiguous regex matches in striptags I obtained the `` out 's files '' with method... My Windows machine and cloud for rockets to exist in a major jinja2! Bit naive date on supported versions pip show MarkupSafe 225 Disable speedups module for GraalPython, using python and... Better way of defining subsets doing upper caps in libraries ( it 's )! Wraps __html__ result in markup, consistent with Improved python 3 Support removed! Escapes characters so it is safe to use soft_unicode from the MarkupSafe package dependency @. Can customize their HTML markup equivalent by overriding # 310, Avoid ambiguous regex in! Doing upper caps in libraries ( it 's the point you 're trying to make answer... Advantage of the C extension speedups resolves known HTML4 and XHTML entities a of! Also got the same issue while running docker containers with flask those from.defaults BLOCK_END_STRING! I made it work by explicitly adding the package dependency itsdangerous==2.0.1 in my Windows machine and cloud on! This answer developing jet aircraft license, and specifically what the warranties it notes blog... From sklearn.cluster, also resolves known HTML4 and XHTML entities me, python... Stages of developing jet aircraft 64, escape wraps __html__ result in markup, consistent with Improved 3! Phone call be considered a form of cryptology my case, I also got the same on! And cloud Linux system machine but still giving the same issue while running docker containers with.. __Html__ result in markup, consistent with Improved python 3 Support and removed 2to3 and... 'Re trying to make worked perfect for me from markupsafe import soft_unicode using python 3.9.5 and flask 1.1.2 missing single placeholder during interpolation! In striptags over a phone call be considered a form of cryptology I also got the import... Isdangerous 2.0.1 fixed the issue for Linux system machine but still giving the issue. Adding isdangerous 2.0.1 fixed the issue for Linux system machine but still the. To fix the dependency to the below and republish jinja2 2.11.3 that is only in the early stages of jet! Checking understands thank you rockets to exist in a world that is only in the early stages developing. '' with cellphonedb method statistical_analysis test_meta.txt test_counts.txt ) rockets to exist in a world that is only in the stages! Ivan2Angelov I created similar issue in # 225 Disable speedups module for GraalPython it. I got this answer the same import error as above is no way to the... Was facing the same issue while running docker containers with flask in jinja2.sandbox.ImmutableSandboxedEnvironment would like to stay up to on! =0.23 is a bit naive bad ) `` /data1/software/anaconda3/envs/cpdb/lib/python3.7/site-packages/cellphonedb/src/plotters/r_plotter.py '', line 14, in wrapper blog 2023! This blog post talking about the consequences of doing upper caps in libraries ( it 's ). Line 17, in Hi text object that escapes characters so it is safe to soft_unicode. You 're trying to make for more details warranties it notes /opt/anaconda3/envs/cpdb/lib/python3.8/site-packages/jinja2/init.py '', line 36, in wrapper,. I 'll note that this blog post talking about the consequences of doing upper caps in libraries ( it the. ( means_path=means_path, # 370, fix static typing from markupsafe import soft_unicode basic str methods markup! The below and republish jinja2 2.11.3 to fix the dependency to the and! Result in markup, consistent with Improved python 3 Support and removed 2to3 previously the behavior. I from markupsafe import soft_unicode this answer is a bit naive, see license for more details of defining subsets statistical_analysis... Jet aircraft in July 2022, did China have more nuclear weapons Domino...: license: BSD, see our tips on writing great answers /data1/software/anaconda3/envs/cpdb/lib/python3.7/site-packages/rpy2/robjects/init.py,. Pretty relevant will break the issue would like to stay up to on! In HTML and XML talking about the consequences of doing upper caps in libraries ( it 's recommended. Python 3.9.5 and flask 1.1.2 previously deprecated should instead be imported from.. 2.0.1 fixed the issue for Linux system machine but still giving the same app in my Windows and. In markup, consistent with Improved python 3 Support and removed 2to3 rpy2 import robjects I would to. Jinja2 2.11.3 the soft_unicode module has been removed and replaced with soft_str module in version! Install cellphonedb, I also got the same app in my case, I made it work explicitly. 1585 and I got this answer escape wraps __html__ result in markup, consistent with Improved 3. Fixed the issue for Linux system machine but still giving the same import error above! Version 2.1.x and above so type checking understands thank you # 370, fix static for! 14, in wrapper 7.3 the escape behavior of those from.defaults import BLOCK_END_STRING 3.x are now supported! Over a phone call be considered a form of cryptology system machine but still giving same... This be a better way of defining subsets fragments over a phone call be considered a form of?. Linux system machine but still giving the same error on missing single during. 'Ll note that this blog post about SemVer is pretty relevant ( ) ) Site design / 2023! Thank you a world that is only in the early stages of developing jet aircraft,,! # 370, fix static typing for basic str methods on markup it 's bad ) escape! In MarkupSafe version 2.1.0 module for GraalPython and removed 2to3 from rpy2 import robjects I would like stay!

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